IL_4V8N_177

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V8N|1|BA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_177 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0611

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V8N|1|BA|G|2737
4V8N|1|BA|A|2738
4V8N|1|BA|U|2739
4V8N|1|BA|A|2740
4V8N|1|BA|A|2741
4V8N|1|BA|C|2742
*
4V8N|1|BA|G|2762
4V8N|1|BA|G|2763
4V8N|1|BA|A|2764
4V8N|1|BA|A|2765
4V8N|1|BA|G|2766
4V8N|1|BA|C|2767

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BN

50S RIBOSOMAL PROTEIN L13