IL_4V8N_202

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_202 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1448

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V8N|1|CA|G|292
4V8N|1|CA|G|293
*
4V8N|1|CA|U|304
4V8N|1|CA|G|305
4V8N|1|CA|G|306
4V8N|1|CA|C|307
4V8N|1|CA|C|308

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16