IL_4V8N_206

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_206 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.127

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V8N|1|CA|G|409
4V8N|1|CA|G|410
4V8N|1|CA|A|411
4V8N|1|CA|A|412
4V8N|1|CA|G|413
4V8N|1|CA|A|414
4V8N|1|CA|A|415
4V8N|1|CA|G|416
*
4V8N|1|CA|U|427
4V8N|1|CA|G|428
4V8N|1|CA|U|429
4V8N|1|CA|A|430
4V8N|1|CA|A|431
4V8N|1|CA|A|432
4V8N|1|CA|C|433

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4