IL_4V8N_213

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_213 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.1113

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4V8N|1|CA|G|597
4V8N|1|CA|U|598
*
4V8N|1|CA|A|640
4V8N|1|CA|U|641
4V8N|1|CA|A|642
4V8N|1|CA|C|643

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CH

30S RIBOSOMAL PROTEIN S8

Chain CQ

30S RIBOSOMAL PROTEIN S17