IL_4V8N_221

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_221 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0841

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V8N|1|CA|C|779
4V8N|1|CA|A|780
4V8N|1|CA|A|781
4V8N|1|CA|A|782
4V8N|1|CA|C|783
*
4V8N|1|CA|G|799
4V8N|1|CA|G|800
4V8N|1|CA|U|801
4V8N|1|CA|A|802
4V8N|1|CA|G|803

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA