IL_4V8N_222

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_222 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.181

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8N|1|CA|C|834
4V8N|1|CA|U|835
4V8N|1|CA|G|836
*
4V8N|1|CA|U|850
4V8N|1|CA|G|851
4V8N|1|CA|G|852

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CF

30S RIBOSOMAL PROTEIN S6

Chain CR

30S RIBOSOMAL PROTEIN S18