IL_4V8N_227

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_227 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2098

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8N|1|CA|G|941
4V8N|1|CA|G|942
4V8N|1|CA|U|943
*
4V8N|1|CA|A|1340
4V8N|1|CA|U|1341
4V8N|1|CA|C|1342

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CV

Transfer RNA; tRNA

Chain CW

Transfer RNA; tRNA