IL_4V8N_245
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCAC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8N_245 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.5904
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V8N|1|CA|G|1405
4V8N|1|CA|U|1406
4V8N|1|CA|C|1407
4V8N|1|CA|A|1408
4V8N|1|CA|C|1409
*
4V8N|1|CA|G|1491
4V8N|1|CA|A|1492
4V8N|1|CA|A|1493
4V8N|1|CA|G|1494
4V8N|1|CA|U|1495
4V8N|1|CA|C|1496
Current chains
- Chain CA
- 16S RRNA
Nearby chains
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain CX
- MRNA
- Chain CY
- Transfer RNA; tRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: