IL_4V8N_253

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_253 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.3089

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V8N|1|CY|C|52
4V8N|1|CY|U|53
4V8N|1|CY|G|54
*
4V8N|1|CY|C|64
4V8N|1|CY|G|65
4V8N|1|CY|G|66

Current chains

Chain CY

E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DQ

50S RIBOSOMAL PROTEIN L16

Chain DZ

50S RIBOSOMAL PROTEIN L25