IL_4V8N_290

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_290 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.0832

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V8N|1|DA|C|1004
4V8N|1|DA|C|1005
4V8N|1|DA|C|1006
4V8N|1|DA|C|1007
4V8N|1|DA|C|1008
4V8N|1|DA|A|1009
4V8N|1|DA|A|1010
4V8N|1|DA|G|1011
*
4V8N|1|DA|C|1150
4V8N|1|DA|G|1151

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DN

50S RIBOSOMAL PROTEIN L13

Chain DU

50S RIBOSOMAL PROTEIN L20