IL_4V8N_330

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_330 not in the Motif Atlas

Homologous match to IL_7RQB_078

Geometric discrepancy: 0.0536

The information below is about IL_7RQB_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4V8N|1|DA|C|2050
4V8N|1|DA|A|2051
4V8N|1|DA|G|2052
*
4V8N|1|DA|C|2617
4V8N|1|DA|G|2618

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D5

50S RIBOSOMAL PROTEIN L32

Chain DE

50S RIBOSOMAL PROTEIN L3