IL_4V8N_356

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAA,UUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_356 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1652

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8N|1|DA|G|2588
4V8N|1|DA|A|2589
4V8N|1|DA|A|2590
*
4V8N|1|DA|U|2604
4V8N|1|DA|U|2605
4V8N|1|DA|C|2606

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CY

Transfer RNA; tRNA

Chain DD

50S RIBOSOMAL PROTEIN L2