IL_4V8N_384

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGCCAC*GGAGCUAAUCG

Length

20 nucleotides

Bulged bases

4V8N|1|AA|A|1256, 4V8N|1|AA|U|1257, 4V8N|1|AA|C|1260, 4V8N|1|AA|U|1278, 4V8N|1|AA|A|1280, 4V8N|1|AA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|AA|C|1254
4V8N|1|AA|G|1255
4V8N|1|AA|A|1256
4V8N|1|AA|U|1257
4V8N|1|AA|G|1258
4V8N|1|AA|C|1259
4V8N|1|AA|C|1260
4V8N|1|AA|A|1261
4V8N|1|AA|C|1262
*
4V8N|1|AA|G|1273
4V8N|1|AA|G|1274
4V8N|1|AA|A|1275
4V8N|1|AA|G|1276
4V8N|1|AA|C|1277
4V8N|1|AA|U|1278
4V8N|1|AA|A|1279
4V8N|1|AA|A|1280
4V8N|1|AA|U|1281
4V8N|1|AA|C|1282
4V8N|1|AA|G|1283

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AU

30S RIBOSOMAL PROTEIN THX