IL_4V8N_388
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCUAG*CAAACC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8N_388 not in the Motif Atlas
- Geometric match to IL_4N0T_001
- Geometric discrepancy: 0.3198
- The information below is about IL_4N0T_001
- Detailed Annotation
- Double sheared; A in syn; two near cWW pairs
- Broad Annotation
- Double sheared; A in syn; two near cWW pairs
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8N|1|BA|G|874
4V8N|1|BA|G|875
4V8N|1|BA|C|876
4V8N|1|BA|U|877
4V8N|1|BA|A|878
4V8N|1|BA|G|879
*
4V8N|1|BA|C|898
4V8N|1|BA|A|899
4V8N|1|BA|A|900
4V8N|1|BA|A|901
4V8N|1|BA|C|902
4V8N|1|BA|C|903
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
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