IL_4V8N_389

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGGG*CCUACC

Length

11 nucleotides

Bulged bases

4V8N|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_389 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.2826

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V8N|1|BA|G|879
4V8N|1|BA|G|880
4V8N|1|BA|G|881
4V8N|1|BA|G|882
4V8N|1|BA|G|883
*
4V8N|1|BA|C|893
4V8N|1|BA|C|894
4V8N|1|BA|U|895
4V8N|1|BA|A|896
4V8N|1|BA|C|897
4V8N|1|BA|C|898

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain BZ

50S RIBOSOMAL PROTEIN L25