IL_4V8N_393

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUGUGAACCCCC*GGGGGGGAGG

Length

23 nucleotides

Bulged bases

4V8N|1|BA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|BA|C|2128
4V8N|1|BA|C|2129
4V8N|1|BA|U|2130
4V8N|1|BA|G|2131
4V8N|1|BA|U|2132
4V8N|1|BA|G|2133
4V8N|1|BA|A|2134
4V8N|1|BA|A|2135
4V8N|1|BA|C|2136
4V8N|1|BA|C|2137
4V8N|1|BA|C|2138
4V8N|1|BA|C|2139
4V8N|1|BA|C|2140
*
4V8N|1|BA|G|2151
4V8N|1|BA|G|2152
4V8N|1|BA|G|2153
4V8N|1|BA|G|2154
4V8N|1|BA|G|2155
4V8N|1|BA|G|2156
4V8N|1|BA|G|2157
4V8N|1|BA|A|2158
4V8N|1|BA|G|2159
4V8N|1|BA|G|2160

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BC

50S RIBOSOMAL PROTEIN L1

Chain CA

Small subunit ribosomal RNA; SSU rRNA