IL_4V8N_397

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

4V8N|1|CA|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_397 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.3544

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8N|1|CA|G|450
4V8N|1|CA|A|451
4V8N|1|CA|A|452
4V8N|1|CA|A|453
4V8N|1|CA|C|454
4V8N|1|CA|C|455
4V8N|1|CA|C|456
*
4V8N|1|CA|G|475
4V8N|1|CA|G|476
4V8N|1|CA|A|477
4V8N|1|CA|C|479
4V8N|1|CA|U|480
4V8N|1|CA|G|481
4V8N|1|CA|A|482
4V8N|1|CA|C|483

Current chains

Chain CA

16S RRNA

Nearby chains

Chain BI

50S RIBOSOMAL PROTEIN L9

Chain CP

30S RIBOSOMAL PROTEIN S16