IL_4V8N_407

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCACG*CGAAGUC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|CA|G|1405
4V8N|1|CA|U|1406
4V8N|1|CA|C|1407
4V8N|1|CA|A|1408
4V8N|1|CA|C|1409
4V8N|1|CA|G|1410
*
4V8N|1|CA|C|1490
4V8N|1|CA|G|1491
4V8N|1|CA|A|1492
4V8N|1|CA|A|1493
4V8N|1|CA|G|1494
4V8N|1|CA|U|1495
4V8N|1|CA|C|1496

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CX

MRNA

Chain CY

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA