3D structure

PDB id
4V8N (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUGCGUAGGAUAGGUGGGAG*CGCCGGUGAAAUACCACCCUG
Length
41 nucleotides
Bulged bases
4V8N|1|DA|C|2179
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8N|1|DA|C|2108
4V8N|1|DA|U|2109
4V8N|1|DA|G|2110
4V8N|1|DA|C|2111
4V8N|1|DA|G|2112
4V8N|1|DA|U|2113
4V8N|1|DA|A|2114
4V8N|1|DA|G|2115
4V8N|1|DA|G|2116
4V8N|1|DA|A|2117
4V8N|1|DA|U|2118
4V8N|1|DA|A|2119
4V8N|1|DA|G|2120
4V8N|1|DA|G|2121
4V8N|1|DA|U|2122
4V8N|1|DA|G|2123
4V8N|1|DA|G|2124
4V8N|1|DA|G|2125
4V8N|1|DA|A|2126
4V8N|1|DA|G|2127
*
4V8N|1|DA|C|2161
4V8N|1|DA|G|2162
4V8N|1|DA|C|2163
4V8N|1|DA|C|2164
4V8N|1|DA|G|2165
4V8N|1|DA|G|2166
4V8N|1|DA|U|2167
4V8N|1|DA|G|2168
4V8N|1|DA|A|2169
4V8N|1|DA|A|2170
4V8N|1|DA|A|2171
4V8N|1|DA|U|2172
4V8N|1|DA|A|2173
4V8N|1|DA|C|2174
4V8N|1|DA|C|2175
4V8N|1|DA|A|2176
4V8N|1|DA|C|2177
4V8N|1|DA|C|2178
4V8N|1|DA|C|2179
4V8N|1|DA|U|2180
4V8N|1|DA|G|2181

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

Chain CW
Transfer RNA; tRNA
Chain DC
50S RIBOSOMAL PROTEIN L1

Coloring options:

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