IL_4V8N_427

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

4V8N|1|CA|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_427 not in the Motif Atlas

Homologous match to IL_5J7L_042

Geometric discrepancy: 0.3117

The information below is about IL_5J7L_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V8N|1|CA|G|953
4V8N|1|CA|G|954
*
4V8N|1|CA|C|1226
4V8N|1|CA|A|1227
4V8N|1|CA|C|1228

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CS

30S RIBOSOMAL PROTEIN S19

Chain CV

Transfer RNA; tRNA

Chain CY

Transfer RNA; tRNA