IL_4V8N_428

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGGGAACC*GGGUGCCCCGCGAGGGGAGCCCU

Length

31 nucleotides

Bulged bases

4V8N|1|CA|A|1005, 4V8N|1|CA|G|1024, 4V8N|1|CA|U|1025, 4V8N|1|CA|G|1026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|CA|A|1001
4V8N|1|CA|G|1001|||A
4V8N|1|CA|G|1002
4V8N|1|CA|G|1003
4V8N|1|CA|A|1004
4V8N|1|CA|A|1005
4V8N|1|CA|C|1006
4V8N|1|CA|C|1007
*
4V8N|1|CA|G|1022
4V8N|1|CA|G|1023
4V8N|1|CA|G|1024
4V8N|1|CA|U|1025
4V8N|1|CA|G|1026
4V8N|1|CA|C|1027
4V8N|1|CA|C|1028
4V8N|1|CA|C|1029
4V8N|1|CA|C|1030
4V8N|1|CA|G|1030|||A
4V8N|1|CA|C|1030|||B
4V8N|1|CA|G|1030|||C
4V8N|1|CA|A|1030|||D
4V8N|1|CA|G|1031
4V8N|1|CA|G|1032
4V8N|1|CA|G|1033
4V8N|1|CA|G|1034
4V8N|1|CA|A|1035
4V8N|1|CA|G|1036
4V8N|1|CA|C|1037
4V8N|1|CA|C|1038
4V8N|1|CA|C|1039
4V8N|1|CA|U|1040

Current chains

Chain CA

16S RRNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain BA

Large subunit ribosomal RNA; LSU rRNA