IL_4V8O_007

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGCCGC*GUGGUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_007 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3273

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V8O|1|AA|G|69
4V8O|1|AA|G|70
4V8O|1|AA|C|71
4V8O|1|AA|C|72
4V8O|1|AA|G|73
4V8O|1|AA|C|76
*
4V8O|1|AA|G|93
4V8O|1|AA|U|96
4V8O|1|AA|G|97
4V8O|1|AA|G|98
4V8O|1|AA|U|99
4V8O|1|AA|C|100

Current chains

Chain AA

16S RRNA

Nearby chains