IL_4V8O_021

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAAGAAGC*GUGUAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_021 not in the Motif Atlas

Homologous match to IL_6CZR_129

Geometric discrepancy: 0.1659

The information below is about IL_6CZR_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58819.1

Basepair signature

cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V8O|1|AA|G|409
4V8O|1|AA|G|410
4V8O|1|AA|A|411
4V8O|1|AA|A|412
4V8O|1|AA|G|413
4V8O|1|AA|A|414
4V8O|1|AA|A|415
4V8O|1|AA|G|416
4V8O|1|AA|C|417
*
4V8O|1|AA|G|426
4V8O|1|AA|U|427
4V8O|1|AA|G|428
4V8O|1|AA|U|429
4V8O|1|AA|A|430
4V8O|1|AA|A|431
4V8O|1|AA|A|432
4V8O|1|AA|C|433

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4