IL_4V8O_022

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_022 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1713

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8O|1|AA|G|446
4V8O|1|AA|G|447
4V8O|1|AA|A|448
4V8O|1|AA|C|449
4V8O|1|AA|G|450
*
4V8O|1|AA|C|483
4V8O|1|AA|G|484
4V8O|1|AA|G|485
4V8O|1|AA|U|486
4V8O|1|AA|A|487
4V8O|1|AA|C|488

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AY

PEPTIDE CHAIN RELEASE FACTOR 3