IL_4V8O_050

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUAG*CUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUAG,CUAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_050 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3934

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V8O|1|AA|U|1121
4V8O|1|AA|U|1122
4V8O|1|AA|A|1123
4V8O|1|AA|G|1124
*
4V8O|1|AA|C|1149
4V8O|1|AA|U|1150
4V8O|1|AA|A|1151
4V8O|1|AA|A|1152

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10