IL_4V8O_080

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAGC*GUGGGG

Length

11 nucleotides

Bulged bases

4V8O|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_080 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3806

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8O|1|BA|C|287
4V8O|1|BA|C|288
4V8O|1|BA|A|289
4V8O|1|BA|G|290
4V8O|1|BA|C|291
*
4V8O|1|BA|G|349
4V8O|1|BA|U|350
4V8O|1|BA|G|351
4V8O|1|BA|G|352
4V8O|1|BA|G|353
4V8O|1|BA|G|354

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains