IL_4V8O_122

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

ACG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACG,CGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_122 not in the Motif Atlas

Geometric match to IL_4E48_004

Geometric discrepancy: 0.1962

The information below is about IL_4E48_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V8O|1|BA|A|1317
4V8O|1|BA|C|1318
4V8O|1|BA|G|1319
*
4V8O|1|BA|C|1333
4V8O|1|BA|G|1334
4V8O|1|BA|U|1335

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BX

50S RIBOSOMAL PROTEIN L23