IL_4V8O_157

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_157 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.2021

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

4V8O|1|BA|C|2078
4V8O|1|BA|U|2079
4V8O|1|BA|G|2080
*
4V8O|1|BA|C|2240
4V8O|1|BA|A|2241
4V8O|1|BA|G|2242

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BD

50S RIBOSOMAL PROTEIN L2