IL_4V8O_174
3D structure
- PDB id
- 4V8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GUCC*GGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8O_174 not in the Motif Atlas
- Geometric match to IL_4V9F_097
- Geometric discrepancy: 0.2804
- The information below is about IL_4V9F_097
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_68118.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
4V8O|1|BA|G|2400
4V8O|1|BA|U|2401
4V8O|1|BA|C|2402
4V8O|1|BA|C|2403
*
4V8O|1|BA|G|2414
4V8O|1|BA|G|2415
4V8O|1|BA|C|2416
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B1
- 50S RIBOSOMAL PROTEIN L28
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
- Chain B8
- 50S RIBOSOMAL PROTEIN L35
- Chain BP
- 50S RIBOSOMAL PROTEIN L15
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