IL_4V8O_248

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGCGCCUGCGUAGGAUAGGU*ACCCUGGCGCG

Length

31 nucleotides

Bulged bases

4V8O|1|BA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8O|1|BA|C|2103
4V8O|1|BA|G|2104
4V8O|1|BA|C|2105
4V8O|1|BA|G|2106
4V8O|1|BA|C|2107
4V8O|1|BA|C|2108
4V8O|1|BA|U|2109
4V8O|1|BA|G|2110
4V8O|1|BA|C|2111
4V8O|1|BA|G|2112
4V8O|1|BA|U|2113
4V8O|1|BA|A|2114
4V8O|1|BA|G|2115
4V8O|1|BA|G|2116
4V8O|1|BA|A|2117
4V8O|1|BA|U|2118
4V8O|1|BA|A|2119
4V8O|1|BA|G|2120
4V8O|1|BA|G|2121
4V8O|1|BA|U|2122
*
4V8O|1|BA|A|2176
4V8O|1|BA|C|2177
4V8O|1|BA|C|2178
4V8O|1|BA|C|2179
4V8O|1|BA|U|2180
4V8O|1|BA|G|2181
4V8O|1|BA|G|2182
4V8O|1|BA|C|2183
4V8O|1|BA|G|2184
4V8O|1|BA|C|2185
4V8O|1|BA|G|2186

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AV

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1