IL_4V8Q_001

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_001 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0648

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8Q|1|AA|G|24
4V8Q|1|AA|U|25
4V8Q|1|AA|G|26
4V8Q|1|AA|G|27
4V8Q|1|AA|A|28
4V8Q|1|AA|U|29
4V8Q|1|AA|G|30
*
4V8Q|1|AA|C|510
4V8Q|1|AA|U|511
4V8Q|1|AA|G|512
4V8Q|1|AA|A|513
4V8Q|1|AA|A|514
4V8Q|1|AA|A|515
4V8Q|1|AA|C|516

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S RIBOSOMAL PROTEIN L32

Chain AU

50S RIBOSOMAL PROTEIN L20

Chain AW

50S RIBOSOMAL PROTEIN L22