IL_4V8Q_004

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4V8Q|1|AA|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_004 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.0991

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

4V8Q|1|AA|G|81
4V8Q|1|AA|G|82
4V8Q|1|AA|G|83
4V8Q|1|AA|A|84
4V8Q|1|AA|G|85
*
4V8Q|1|AA|C|97
4V8Q|1|AA|G|98
4V8Q|1|AA|U|99
4V8Q|1|AA|G|100
4V8Q|1|AA|G|102
4V8Q|1|AA|A|103
4V8Q|1|AA|U|104
4V8Q|1|AA|C|105

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S RIBOSOMAL PROTEIN L29

Chain AY

50S RIBOSOMAL PROTEIN L24