IL_4V8Q_010

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

4V8Q|1|AA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_010 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3375

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8Q|1|AA|C|280
4V8Q|1|AA|G|281
4V8Q|1|AA|A|282
4V8Q|1|AA|A|283
4V8Q|1|AA|U|284
4V8Q|1|AA|C|285
*
4V8Q|1|AA|G|356
4V8Q|1|AA|A|357
4V8Q|1|AA|U|358
4V8Q|1|AA|A|359
4V8Q|1|AA|G|360

Current chains

Chain AA

23S ribosomal RNA

Nearby chains