IL_4V8Q_017

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V8Q|1|AA|G|801, 4V8Q|1|AA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_017 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0784

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8Q|1|AA|G|674
4V8Q|1|AA|A|675
4V8Q|1|AA|A|676
4V8Q|1|AA|A|677
4V8Q|1|AA|C|678
*
4V8Q|1|AA|G|799
4V8Q|1|AA|A|800
4V8Q|1|AA|G|801
4V8Q|1|AA|A|802
4V8Q|1|AA|U|803
4V8Q|1|AA|A|804
4V8Q|1|AA|G|805
4V8Q|1|AA|C|806

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S RIBOSOMAL PROTEIN L4

Chain AP

50S RIBOSOMAL PROTEIN L15