IL_4V8Q_027
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_027 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.0947
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Q|1|AA|C|857
4V8Q|1|AA|U|858
4V8Q|1|AA|G|859
4V8Q|1|AA|U|860
4V8Q|1|AA|A|861
4V8Q|1|AA|G|862
*
4V8Q|1|AA|C|915
4V8Q|1|AA|G|916
4V8Q|1|AA|A|917
4V8Q|1|AA|A|918
4V8Q|1|AA|G|919
4V8Q|1|AA|G|920
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A0
- 50S RIBOSOMAL PROTEIN L27
- Chain A3
- 50S RIBOSOMAL PROTEIN L30
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AQ
- 50S RIBOSOMAL PROTEIN L16
- Chain AZ
- 50S RIBOSOMAL PROTEIN L25
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