IL_4V8Q_033

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_033 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.2399

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8Q|1|AA|G|881
4V8Q|1|AA|G|882
4V8Q|1|AA|G|883
*
4V8Q|1|AA|C|893
4V8Q|1|AA|C|894
4V8Q|1|AA|U|895

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AZ

50S RIBOSOMAL PROTEIN L25