IL_4V8Q_037

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_037 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.1106

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V8Q|1|AA|C|1004
4V8Q|1|AA|C|1005
4V8Q|1|AA|C|1006
4V8Q|1|AA|C|1007
4V8Q|1|AA|C|1008
4V8Q|1|AA|A|1009
4V8Q|1|AA|A|1010
4V8Q|1|AA|G|1011
*
4V8Q|1|AA|C|1150
4V8Q|1|AA|G|1151

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AN

50S RIBOSOMAL PROTEIN L13

Chain AU

50S RIBOSOMAL PROTEIN L20