IL_4V8Q_038

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V8Q|1|AA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_038 not in the Motif Atlas

Homologous match to IL_7RQB_038

Geometric discrepancy: 0.1071

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4V8Q|1|AA|G|1011
4V8Q|1|AA|U|1012
4V8Q|1|AA|C|1013
*
4V8Q|1|AA|G|1149
4V8Q|1|AA|C|1150

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AN

50S RIBOSOMAL PROTEIN L13

Chain AU

50S RIBOSOMAL PROTEIN L20