IL_4V8Q_041

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V8Q|1|AA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_041 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.0912

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V8Q|1|AA|G|1031
4V8Q|1|AA|A|1032
4V8Q|1|AA|U|1033
4V8Q|1|AA|G|1034
*
4V8Q|1|AA|C|1121
4V8Q|1|AA|G|1122
4V8Q|1|AA|C|1123

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A9

50S RIBOSOMAL PROTEIN L36

Chain AH

50S RIBOSOMAL PROTEIN L6

Chain AQ

50S RIBOSOMAL PROTEIN L16