IL_4V8Q_046

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_046 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0504

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V8Q|1|AA|A|1262
4V8Q|1|AA|U|1263
4V8Q|1|AA|G|1264
4V8Q|1|AA|A|1265
4V8Q|1|AA|G|1266
4V8Q|1|AA|U|1267
4V8Q|1|AA|A|1268
4V8Q|1|AA|A|1269
*
4V8Q|1|AA|U|2011
4V8Q|1|AA|G|2012
4V8Q|1|AA|A|2013
4V8Q|1|AA|A|2014
4V8Q|1|AA|A|2015
4V8Q|1|AA|U|2016
4V8Q|1|AA|U|2017

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S RIBOSOMAL PROTEIN L32

Chain AF

50S RIBOSOMAL PROTEIN L4

Chain AW

50S RIBOSOMAL PROTEIN L22