IL_4V8Q_053

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_053 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.103

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V8Q|1|AA|C|1417
4V8Q|1|AA|G|1418
4V8Q|1|AA|A|1419
4V8Q|1|AA|U|1420
4V8Q|1|AA|G|1421
*
4V8Q|1|AA|C|1577
4V8Q|1|AA|U|1578
4V8Q|1|AA|A|1579
4V8Q|1|AA|A|1580
4V8Q|1|AA|G|1581

Current chains

Chain AA

23S ribosomal RNA

Nearby chains