IL_4V8Q_062

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_062 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0681

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8Q|1|AA|G|1651
4V8Q|1|AA|A|1652
4V8Q|1|AA|G|1653
4V8Q|1|AA|A|1654
4V8Q|1|AA|A|1655
4V8Q|1|AA|C|1656
*
4V8Q|1|AA|G|2004
4V8Q|1|AA|A|2005
4V8Q|1|AA|C|2006

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S RIBOSOMAL PROTEIN L3

Chain AR

50S RIBOSOMAL PROTEIN L17