IL_4V8Q_066

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V8Q|1|AA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_066 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1105

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V8Q|1|AA|C|1686
4V8Q|1|AA|G|1687
4V8Q|1|AA|U|1688
4V8Q|1|AA|A|1689
4V8Q|1|AA|A|1690
4V8Q|1|AA|C|1691
*
4V8Q|1|AA|G|1696
4V8Q|1|AA|G|1697
4V8Q|1|AA|A|1698
4V8Q|1|AA|G|1699
4V8Q|1|AA|A|1700
4V8Q|1|AA|A|1701
4V8Q|1|AA|G|1702

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA