IL_4V8Q_076

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_076 not in the Motif Atlas

Homologous match to IL_7RQB_078

Geometric discrepancy: 0.0808

The information below is about IL_7RQB_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4V8Q|1|AA|C|2050
4V8Q|1|AA|A|2051
4V8Q|1|AA|G|2052
*
4V8Q|1|AA|C|2617
4V8Q|1|AA|G|2618

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S RIBOSOMAL PROTEIN L32

Chain AE

50S RIBOSOMAL PROTEIN L3