IL_4V8Q_083

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_083 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3882

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V8Q|1|AA|U|2098
4V8Q|1|AA|U|2099
4V8Q|1|AA|G|2100
4V8Q|1|AA|G|2101
*
4V8Q|1|AA|C|2188
4V8Q|1|AA|U|2189
4V8Q|1|AA|G|2190
4V8Q|1|AA|G|2191

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain BK

30S RIBOSOMAL PROTEIN S11