IL_4V8Q_089

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_089 not in the Motif Atlas

Geometric match to IL_3D0M_002

Geometric discrepancy: 0.2328

The information below is about IL_3D0M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4V8Q|1|AA|C|2136
4V8Q|1|AA|C|2137
4V8Q|1|AA|C|2138
*
4V8Q|1|AA|G|2153
4V8Q|1|AA|G|2154
4V8Q|1|AA|G|2155

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S RIBOSOMAL PROTEIN L1