IL_4V8Q_094

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

4V8Q|1|AA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_094 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.4873

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V8Q|1|AA|U|2401
4V8Q|1|AA|C|2402
4V8Q|1|AA|C|2403
*
4V8Q|1|AA|G|2414
4V8Q|1|AA|G|2415

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S RIBOSOMAL PROTEIN L28

Chain A6

50S RIBOSOMAL PROTEIN L33

Chain A8

50S RIBOSOMAL PROTEIN L35

Chain AP

50S RIBOSOMAL PROTEIN L15