IL_4V8Q_101

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4V8Q|1|AA|G|2576, 4V8Q|1|AA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_101 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0816

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4V8Q|1|AA|C|2510
4V8Q|1|AA|U|2511
4V8Q|1|AA|C|2512
*
4V8Q|1|AA|G|2574
4V8Q|1|AA|C|2575
4V8Q|1|AA|G|2576
4V8Q|1|AA|A|2577
4V8Q|1|AA|G|2578

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S RIBOSOMAL PROTEIN L32

Chain AE

50S RIBOSOMAL PROTEIN L3