IL_4V8Q_102

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4V8Q|1|AA|A|2572, 4V8Q|1|AA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_102 not in the Motif Atlas

Geometric match to IL_7RQB_098

Geometric discrepancy: 0.0839

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V8Q|1|AA|C|2512
4V8Q|1|AA|G|2513
*
4V8Q|1|AA|C|2571
4V8Q|1|AA|A|2572
4V8Q|1|AA|C|2573
4V8Q|1|AA|G|2574

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S RIBOSOMAL PROTEIN L3

Chain AN

50S RIBOSOMAL PROTEIN L13