IL_4V8Q_119

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGGUAC*GGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_119 not in the Motif Atlas

Homologous match to IL_7RQB_115

Geometric discrepancy: 0.0679

The information below is about IL_7RQB_115

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.3

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V8Q|1|AB|C|71
4V8Q|1|AB|G|72
4V8Q|1|AB|A|73
4V8Q|1|AB|U|74
4V8Q|1|AB|G|75
4V8Q|1|AB|G|76
4V8Q|1|AB|U|77
4V8Q|1|AB|A|78
4V8Q|1|AB|C|79
*
4V8Q|1|AB|G|98
4V8Q|1|AB|G|99
4V8Q|1|AB|A|100
4V8Q|1|AB|G|101
4V8Q|1|AB|A|102
4V8Q|1|AB|G|103
4V8Q|1|AB|U|104
4V8Q|1|AB|A|105
4V8Q|1|AB|G|106

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain A0

50S RIBOSOMAL PROTEIN L27

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AQ

50S RIBOSOMAL PROTEIN L16

Chain AZ

50S RIBOSOMAL PROTEIN L25